I have an implementation of jqGrid 4.5.4 and I have found this bug, too, independently of this thread. It is indeed peculiar. I just wanted to add my voice to this issue.
I can confirm the bug. It’s important to mention that the problem don’t exist if one uses old versions of jQuery (for example 1.8.3) and old version of jQuery UI (for example 1.8.24). I prepared the demo which uses the old versions of jQuery and jQuery UI and it seems to work without any problems.
Then I get the last version of jQuery UI Multiselect plugin from github and made some small changes to use [selected] selector. I changed two lines of jqGrid code too to do the same. As the result the code seems to work for both new jQuery (1.11.1) and new jQuery UI (1.11.0): the new demo. It’s important to remark that the demo which uses modified ui.multiselect.js and modified jqGrid works with old versions of jQuery (1.8.3) and jQuery UI (1.8.24).
The modification which I made in jqGrid was replacing the line